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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94255299_94256897_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
94255299 - 94256897
Intron Length:
1599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATTTTCA
5'SS Class:
weak_major
3'SS Sequence:
CTGTTCCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TTTTCCACATTT
Flanking Amino Acid:
KADEAAAVNANSSSKGNSVL
Intron Amino Acid Position:
487

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
65.9
33.8
Major BPS
71.2
0.53
1
61
37.5
Major PPT
79.7
0.67
0.8
73.1
32
Minor 5ss
48.4
-0.1
2.3
59
39.7
Minor BPS
53.3
0.18
2.1
81.42
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014237
94250252 - 94337178
86927