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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94261786_94263279_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94261786 - 94263279
Intron Length:
1494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
ATCATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTTTGTTATCA
Flanking Amino Acid:
TIVDYLGFHQTDVMHQNIYD
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
83.4
0.75
0.8
80.8
36
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
52.1
0.06
2.3
71.41
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014237
94250252 - 94337178
86927