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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94280946_94313064_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94280946 - 94313064
Intron Length:
32119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GATTTCTAAACT
Flanking Amino Acid:
SYLRVKSFFQAIQEKHFKKQ
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.3
0.61
0.8
73.4
30.2
Minor 5ss
37.4
-1.4
3.3
52.4
44.8
Minor BPS
68
0.64
1.7
81.59
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014237
94250252 - 94337178
86927