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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94313247_94319791_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
94313247 - 94319791
Intron Length:
6545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTTAAGTAT
5'SS Class:
weak_major
3'SS Sequence:
TTCTCCACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
TCTTCTCCACCA
Flanking Amino Acid:
GRKRRKPIQKQRPAAGNEKS
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.2
55.1
38.3
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
75.6
0.58
0.8
69.6
29.6
Minor 5ss
36.3
-1.6
3.4
53.3
44.8
Minor BPS
46.7
-0.2
2.1
63.87
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014237
94250252 - 94337178
86927