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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94319864_94336627_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94319864 - 94336627
Intron Length:
16764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
AACCTCTGAACT
Flanking Amino Acid:
RKLGVLAGTVGIKTMIPPGE
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
68.8
43.8
Major BPS
69.8
0.49
1
61
37.5
Major PPT
93.6
0.98
0.7
92.3
26.6
Minor 5ss
33.1
-1.9
2.8
33
41.8
Minor BPS
58.5
0.34
1.4
69.94
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014237
94250252 - 94337178
86927