About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94367828_94369115_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94367828 - 94369115
Intron Length:
1288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAAATG
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
TATACTATAATA
Flanking Amino Acid:
SEYHPDASSQESFVISSREL
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
70.5
39.5
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
42.5
-0.8
3
57.1
47.2
Minor BPS
59.5
0.29
1.6
70.37
35.5

Associated Gene:

Gene:
MSANTD3
Ensembl Gene ID:
ENSAPLG00000013833
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014403
94367418 - 94374376
6959