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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94378496_94378952_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94378496 - 94378952
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
THFLGFKHKTVEEALKAHGI
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
71.7
34.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
64.7
0.33
0.9
63.3
37.1
Minor 5ss
38.7
-1.3
3
49.7
46.1
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013907
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041004
94374397 - 94395701
21305
ENSAPLT00000014503
94374397 - 94394370
19974
ENSAPLT00000046593
94374397 - 94395701
21305