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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94378984_94380556_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94378984 - 94380556
Intron Length:
1573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTTTTGTGTTT
Flanking Amino Acid:
VEEALKAHGIVKTAGGTGDQ
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
79.7
0.67
0.9
77.7
36.7
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
38.7
-0.8
3.7
73.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013907
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046593
94374397 - 94395701
21305
ENSAPLT00000041004
94374397 - 94395701
21305
ENSAPLT00000014503
94374397 - 94394370
19974