About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94380617_94381008_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94380617 - 94381008
Intron Length:
392

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TTGGTCTTATCT
Flanking Amino Acid:
VKTPEKLPDYVQTEPERFHG
Intron Amino Acid Position:
225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.8
39.2
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
86.2
0.81
0.8
80.2
31.6
Minor 5ss
33.9
-1.8
2.9
39
40
Minor BPS
62.5
0.47
1.7
78.93
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013907
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046593
94374397 - 94395701
21305
ENSAPLT00000041004
94374397 - 94395701
21305
ENSAPLT00000014503
94374397 - 94394370
19974