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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94381874_94382653_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94381874 - 94382653
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ACTTCATGATTT
Flanking Amino Acid:
CGSKHRLAYLKQHYPEIAES
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
85.1
0.79
0.7
84.7
29.8
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
48.2
-0
1.9
68.48
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013907
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046593
94374397 - 94395701
21305
ENSAPLT00000041004
94374397 - 94395701
21305
ENSAPLT00000014503
94374397 - 94394370
19974