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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94384202_94385359_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94384202 - 94385359
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGCTACATT
Flanking Amino Acid:
APMMRKRWQEYPTADDSPSK
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
1
78.2
36.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.5
0.55
1
73.5
41.9
Minor 5ss
38.7
-1.3
3.4
53.8
43.6
Minor BPS
48.9
-0
2.4
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013907
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041004
94374397 - 94395701
21305
ENSAPLT00000014503
94374397 - 94394370
19974
ENSAPLT00000046593
94374397 - 94395701
21305