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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94385480_94386296_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94385480 - 94386296
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGAGAA
5'SS Class:
major
3'SS Sequence:
ATCACTTTTGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATCACTT
Flanking Amino Acid:
KDGKMPGPIQEKNVQEELEK
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
72.5
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.7
0.4
1.1
67.6
37.3
Minor 5ss
26.1
-2.7
3
30
43
Minor BPS
49.4
0.04
2
76.81
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013907
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046593
94374397 - 94395701
21305
ENSAPLT00000041004
94374397 - 94395701
21305
ENSAPLT00000014503
94374397 - 94394370
19974