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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94386436_94388268_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94386436 - 94388268
Intron Length:
1833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAACAA
5'SS Class:
major
3'SS Sequence:
TTTCTGTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATACAACAAAA
Flanking Amino Acid:
EEDSKGNDSEKCETNKQLQE
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1
64
36
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
75.5
0.57
1
79.5
32.8
Minor 5ss
32.3
-2
3.2
39
40.6
Minor BPS
42.8
-0.5
2
58.19
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013907
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046593
94374397 - 94395701
21305
ENSAPLT00000041004
94374397 - 94395701
21305
ENSAPLT00000014503
94374397 - 94394370
19974