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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94393363_94395166_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
94393363 - 94395166
Intron Length:
1804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCAC
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTAACAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACC
Flanking Amino Acid:
KIAAANPAFRGIDIPNVVRI
Intron Amino Acid Position:
610

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
74.2
36.3
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
56
0.14
1.1
56.5
36.4
Minor 5ss
34.6
-1.8
2.9
44.3
43.4
Minor BPS
85.8
1.1
0.9
89.58
24.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013907
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046593
94374397 - 94395701
21305
ENSAPLT00000041004
94374397 - 94395701
21305