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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94401591_94402067_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94401591 - 94402067
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTGT
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
TGATAGTGAAAG
Flanking Amino Acid:
TAQNRKLNIKDLLSQMHHYS
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
73.8
37.5
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
85.6
0.8
0.6
81.4
23.6
Minor 5ss
47.4
-0.3
2.7
67.3
43.8
Minor BPS
41.3
-0.7
2.3
48.82
43.6

Associated Gene:

Gene:
TEX10
Ensembl Gene ID:
ENSAPLG00000014122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014760
94400169 - 94449408
49240