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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94402775_94408280_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94402775 - 94408280
Intron Length:
5506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
RPKINSSFRLRSLASVMDSA
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
78.7
0.64
0.9
77.9
36.6
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
TEX10
Ensembl Gene ID:
ENSAPLG00000014122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014760
94400169 - 94449408
49240