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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94408525_94410407_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94408525 - 94410407
Intron Length:
1883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAT
U12 Branch Point Sequence:
CTTTCCCTAATA
Flanking Amino Acid:
TKRQDETYKMEVWLRMNYLV
Intron Amino Acid Position:
378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
65.7
40
Major BPS
72.5
0.56
1.2
75
39.9
Major PPT
74.2
0.55
0.8
70.3
29.2
Minor 5ss
28.7
-2.4
3.5
34.2
43.1
Minor BPS
70.7
0.65
1.7
79.96
36.4

Associated Gene:

Gene:
TEX10
Ensembl Gene ID:
ENSAPLG00000014122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014760
94400169 - 94449408
49240