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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94410521_94412276_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94410521 - 94412276
Intron Length:
1756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTCTTTTTTT
Flanking Amino Acid:
VRHKKKDSWKGNKCCMTPSN
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
80.8
33.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
74.9
0.56
0.7
73.2
25
Minor 5ss
36.6
-1.5
3
41.3
44.8
Minor BPS
46.2
-0.2
3.6
83.31
38.3

Associated Gene:

Gene:
TEX10
Ensembl Gene ID:
ENSAPLG00000014122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014760
94400169 - 94449408
49240