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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94419548_94421191_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94419548 - 94421191
Intron Length:
1644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAGCTTTTAATT
Flanking Amino Acid:
SLQATADQIYDPLDGTLVLL
Intron Amino Acid Position:
599

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
1
75.8
40
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
80.5
0.69
0.9
76.9
42.1
Minor 5ss
38.4
-1.3
3.4
58.3
45.6
Minor BPS
65.5
0.56
1.2
73.78
37.5

Associated Gene:

Gene:
TEX10
Ensembl Gene ID:
ENSAPLG00000014122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014760
94400169 - 94449408
49240