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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94434688_94445166_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94434688 - 94445166
Intron Length:
10479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GTTTCATTAAAA
Flanking Amino Acid:
QFLHHWAVTEMICHSLSTIP
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
73.5
37.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
67.3
0.39
1
63.3
40.9
Minor 5ss
33.7
-1.9
3.2
48
47.5
Minor BPS
68.8
0.59
1.7
79.32
35.9

Associated Gene:

Gene:
TEX10
Ensembl Gene ID:
ENSAPLG00000014122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014760
94400169 - 94449408
49240