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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94447203_94448284_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94447203 - 94448284
Intron Length:
1082

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTTG
5'SS Class:
major
3'SS Sequence:
CTGTTCCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
ATCATTTCAATT
Flanking Amino Acid:
DKEDAEHVQKRDMLWGSCIS
Intron Amino Acid Position:
820

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.2
70.4
42.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.3
0.66
0.8
77
31.7
Minor 5ss
45.9
-0.4
3.2
64.1
47.4
Minor BPS
51.4
0.12
1.5
66.45
39

Associated Gene:

Gene:
TEX10
Ensembl Gene ID:
ENSAPLG00000014122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014760
94400169 - 94449408
49240