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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94448496_94449294_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94448496 - 94449294
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TACCCTTTTATT
Flanking Amino Acid:
LVQQIIKDIMTLKSGEVQEQ
Intron Amino Acid Position:
891

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.7
0.67
0.7
72.3
32.4
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
55.7
0.26
1.6
70.01
41.6

Associated Gene:

Gene:
TEX10
Ensembl Gene ID:
ENSAPLG00000014122
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014760
94400169 - 94449408
49240