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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94451815_94453397_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94451815 - 94453397
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTGACGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
AGATCCTCCACT
Flanking Amino Acid:
LKLSEVPLVSGAWSRSAWTA
Intron Amino Acid Position:
1104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
63.3
0.3
0.9
58.6
36.7
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
53.8
0.2
2
72.83
43.4

Associated Gene:

Gene:
INVS
Ensembl Gene ID:
ENSAPLG00000011911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029568
94451600 - 94526188
74589