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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94460403_94466945_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94460403 - 94466945
Intron Length:
6543

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ACTGTAATTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTACTGTAATT
Flanking Amino Acid:
HEQLRKDAAAKKREEESKRK
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71.1
0.48
1
62.7
41.7
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
62.1
0.46
2
84.21
37.1

Associated Gene:

Gene:
INVS
Ensembl Gene ID:
ENSAPLG00000011911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027145
94450541 - 94526188
75648
ENSAPLT00000012429
94450541 - 94532276
81736
ENSAPLT00000029568
94451600 - 94526188
74589