About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94467159_94470126_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94467159 - 94470126
Intron Length:
2968

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTACTT
5'SS Class:
major
3'SS Sequence:
TTCTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATGAT
U12 Branch Point Sequence:
GATTGCTGCATT
Flanking Amino Acid:
FPNHMENSEERYTPLDYALL
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
70
40.1
Major BPS
69.5
0.48
1.2
59.7
46.7
Major PPT
95.9
1.03
0.5
95.6
15.1
Minor 5ss
44.1
-0.6
3.1
65.7
45.3
Minor BPS
45.7
-0.2
2.3
66.76
43.9

Associated Gene:

Gene:
INVS
Ensembl Gene ID:
ENSAPLG00000011911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029568
94451600 - 94526188
74589
ENSAPLT00000027145
94450541 - 94526188
75648
ENSAPLT00000012429
94450541 - 94532276
81736