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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94472051_94473450_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94472051 - 94473450
Intron Length:
1400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCTGT
5'SS Class:
major
3'SS Sequence:
TTTGTTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGTTCAAAAATT
Flanking Amino Acid:
HKEVIQTLIKGGARVDLVDQ
Intron Amino Acid Position:
412

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.3
69.7
43.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
41
-1
3
56.9
47.2
Minor BPS
48.6
-0
2.1
75.08
41.5

Associated Gene:

Gene:
INVS
Ensembl Gene ID:
ENSAPLG00000011911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027145
94450541 - 94526188
75648
ENSAPLT00000012429
94450541 - 94532276
81736
ENSAPLT00000029568
94451600 - 94526188
74589