Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94483128_94489956_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

94483128 - 94489956

Intron Length:

6829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGCTGG

5'SS Class:

major

3'SS Sequence:

ATGTTTTTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTGTTTTTATTA

Flanking Amino Acid:

RTPLHWAALLGHAQIVHLLL

Intron Amino Acid Position:

266

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.4

0.69

62.4

44.7

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.4

0.73

0.8

Minor 5ss

43.4

-0.7

2.9

52.7

46.4

Minor BPS

61.1

0.34

1.5

69.94

37.5

Associated Gene:

Gene:

INVS

Ensembl Gene ID:

ENSAPLG00000011911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029568

94451600 - 94526188

74589

ENSAPLT00000027145

94450541 - 94526188

75648

ENSAPLT00000012429

94450541 - 94532276

81736