About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94496043_94499000_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94496043 - 94499000
Intron Length:
2958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAATA
5'SS Class:
strong_major
3'SS Sequence:
TATTGTGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTGTAAAACT
Flanking Amino Acid:
GEVDTQDKNKQTALHWSAYY
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
83.2
28.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.6
0.64
1
69.5
45.7
Minor 5ss
36.4
-1.5
3.1
48.8
46.9
Minor BPS
47
-0.1
2.3
73.24
43.7

Associated Gene:

Gene:
INVS
Ensembl Gene ID:
ENSAPLG00000011911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029568
94451600 - 94526188
74589
ENSAPLT00000027145
94450541 - 94526188
75648
ENSAPLT00000012429
94450541 - 94532276
81736