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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94499175_94524785_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94499175 - 94524785
Intron Length:
25611

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTACCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCCTTACCC
Flanking Amino Acid:
RTALHLAAQKGNYRFMKLLL
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
82.6
29.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.8
0.67
0.8
73.4
36.1
Minor 5ss
36.1
-1.6
2.6
44
43
Minor BPS
82.1
0.99
1.5
90.55
30.7

Associated Gene:

Gene:
INVS
Ensembl Gene ID:
ENSAPLG00000011911
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029568
94451600 - 94526188
74589
ENSAPLT00000027145
94450541 - 94526188
75648
ENSAPLT00000012429
94450541 - 94532276
81736