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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94536437_94553648_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94536437 - 94553648
Intron Length:
17212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCCCG
5'SS Class:
major
3'SS Sequence:
TTTCTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTAACTTTAAAT
Flanking Amino Acid:
PQPGRLVLLMVSWLFNPTRS
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.56
1
55
43.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
32.9
-2
3
36.9
41.3
Minor BPS
64.9
0.54
1.4
76.1
39.8

Associated Gene:

Gene:
ERP44
Ensembl Gene ID:
ENSAPLG00000011639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012171
94536380 - 94581669
45290