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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94553722_94555399_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94553722 - 94555399
Intron Length:
1678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAC
U12 Branch Point Sequence:
TGACGTTGAATT
Flanking Amino Acid:
LDSGNIDDILNNADVALVNF
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
83.3
27.9
Major BPS
62.5
0.31
1.2
54.8
42.1
Major PPT
80.5
0.69
0.7
72.5
32.2
Minor 5ss
34.6
-1.7
2.8
44.2
37
Minor BPS
47.4
-0.1
1.8
63.97
40.4

Associated Gene:

Gene:
ERP44
Ensembl Gene ID:
ENSAPLG00000011639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012171
94536380 - 94581669
45290