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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94555440_94558495_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
94555440 - 94558495
Intron Length:
3056

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCAAGTTAATA
Flanking Amino Acid:
DVALVNFYADWCRFSQMLHP
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.2
28.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.7
0.76
0.7
79.4
26.2
Minor 5ss
40.6
-1
2.8
49.4
41.4
Minor BPS
48.6
-0.1
2.2
64.77
41.9

Associated Gene:

Gene:
ERP44
Ensembl Gene ID:
ENSAPLG00000011639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012171
94536380 - 94581669
45290