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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94558612_94568087_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94558612 - 94568087
Intron Length:
9476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTCTTCATT
Flanking Amino Acid:
VFARVDCDQHSDIAQRYRIS
Intron Amino Acid Position:
96

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
86.6
0.82
0.7
85.6
28.3
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
73.4
0.82
1.7
91.07
32.9

Associated Gene:

Gene:
ERP44
Ensembl Gene ID:
ENSAPLG00000011639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012171
94536380 - 94581669
45290