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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94568273_94568717_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94568273 - 94568717
Intron Length:
445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTTGCTTTTACA
Flanking Amino Acid:
QDLEEINAADRSRRNIIGYF
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
84.6
32.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
89.1
0.88
0.7
83.7
31.3
Minor 5ss
40.6
-1
3.4
62.3
42.4
Minor BPS
66.7
0.52
1.7
78.96
37.6

Associated Gene:

Gene:
ERP44
Ensembl Gene ID:
ENSAPLG00000011639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012171
94536380 - 94581669
45290