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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94572569_94573971_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94572569 - 94573971
Intron Length:
1403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TGTTTTTCAACT
Flanking Amino Acid:
GDNVIYKPPGENAPDMVYLG
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81.5
32.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
80
0.67
0.8
76.7
30.6
Minor 5ss
35.8
-1.6
3.3
40.8
45.4
Minor BPS
69.6
0.69
1.5
84.54
36

Associated Gene:

Gene:
ERP44
Ensembl Gene ID:
ENSAPLG00000011639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012171
94536380 - 94581669
45290