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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94579744_94581432_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94579744 - 94581432
Intron Length:
1689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TGATGTTTACGG
Flanking Amino Acid:
PDPTDVAPGQPIQDLASSPP
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
84.8
28.2
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
89.5
0.89
0.7
87.9
29.5
Minor 5ss
40.3
-1.1
3.3
55.3
48.9
Minor BPS
42.6
-0.7
2.2
48.14
45.5

Associated Gene:

Gene:
ERP44
Ensembl Gene ID:
ENSAPLG00000011639
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012171
94536380 - 94581669
45290