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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94585502_94586202_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94585502 - 94586202
Intron Length:
701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TTTGTCTTTACA
Flanking Amino Acid:
TEEGTKNLRKAAKYKLAALP
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
77
35.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
89.5
0.89
0.7
84
31
Minor 5ss
35.4
-1.7
3.5
50.7
46.2
Minor BPS
66.2
0.5
1.7
78.67
37.8

Associated Gene:

Gene:
STX17
Ensembl Gene ID:
ENSAPLG00000011569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012064
94585262 - 94610713
25452