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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94586290_94588293_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94586290 - 94588293
Intron Length:
2004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTGCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
TCACTCATAATT
Flanking Amino Acid:
LVTEFSVLVNAQQEKIDRIE
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
70.3
0.46
0.9
62.3
38.9
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
55.7
0.26
1.6
70.84
40.2

Associated Gene:

Gene:
STX17
Ensembl Gene ID:
ENSAPLG00000011569
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012064
94585262 - 94610713
25452