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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94658910_94659872_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
94658910 - 94659872
Intron Length:
963

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTACGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTACGC
Flanking Amino Acid:
KCLSVGMVKEVVRTDSLKGR
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
83.6
0.76
0.8
80.7
30.2
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
51.4
0.02
1.9
64.58
42.1

Associated Gene:

Gene:
NR4A3
Ensembl Gene ID:
ENSAPLG00000011263
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017948
94642086 - 94665768
23683
ENSAPLT00000011742
94642086 - 94662972
20887