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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9472618_9489868_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9472618 - 9489868
Intron Length:
17251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTACA
5'SS Class:
major
3'SS Sequence:
TAATCTCTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CATTTTTTAATA
Flanking Amino Acid:
KLQMSAFDDVNVLGPAVTFR
Intron Amino Acid Position:
604

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
76.1
32.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
75
0.56
0.9
66.8
40
Minor 5ss
43.8
-0.7
2.4
52.2
38.6
Minor BPS
70.2
0.63
1.2
71.36
35.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013939
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017019
9125596 - 9763338
637743