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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94763546_94764739_F

Intron Information:

Intron Rank:
143958
Intron Class:
major
Intron Phase:
Intron Coordinates:
94763546 - 94764739
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTATC
5'SS Class:
major
3'SS Sequence:
TTCTGCTTCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GGTTTCTCAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.2
77.3
37.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.1
0.63
0.8
76.9
31.8
Minor 5ss
35.3
-1.7
2.9
45.6
42.6
Minor BPS
62.3
0.38
1.5
68.99
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027588
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034988
94763448 - 94773656
10209