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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94764826_94773604_F

Intron Information:

Intron Rank:
143959
Intron Class:
major
Intron Phase:
Intron Coordinates:
94764826 - 94773604
Intron Length:
8779

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTAATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTCTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
82.4
0.73
0.9
77.7
34.4
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
87.5
1.17
0.8
90.77
23.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027588
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034988
94763448 - 94773656
10209