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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94814153_94817559_F

Intron Information:

Intron Rank:
132679
Intron Class:
major
Intron Phase:
Intron Coordinates:
94814153 - 94817559
Intron Length:
3407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCTCTT
5'SS Class:
major
3'SS Sequence:
ATGTTCTCTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAC
U12 Branch Point Sequence:
TTTTCTTCTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
72.7
44.5
Major BPS
69.2
0.48
1
61
37.1
Major PPT
68.6
0.42
1.1
68.9
36.8
Minor 5ss
44.3
-0.6
3.3
67.2
43.9
Minor BPS
54.3
-0
1.9
67.32
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021307
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046256
94814051 - 94939086
125036