Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_9489956_9511741_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9489956 - 9511741

Intron Length:

21786

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

TCCCTTTCAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCGTAA

U12 Branch Point Sequence:

ATTTTCGTAACG

Flanking Amino Acid:

KEYGYIVTMKDPLSVEKGLE

Intron Amino Acid Position:

575

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

80.8

33.6

Major BPS

57.3

0.18

1.4

57.7

41.3

Major PPT

76.3

0.59

0.8

72.6

30.8

Minor 5ss

40.6

-1.1

2.8

47.9

41.8

Minor BPS

0.27

2.1

73.16

39.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013939

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017019

9125596 - 9763338

637743