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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94908390_94938400_F

Intron Information:

Intron Rank:
132681
Intron Class:
major
Intron Phase:
Intron Coordinates:
94908390 - 94938400
Intron Length:
30011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
CAATTTCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAA
U12 Branch Point Sequence:
TCCTCCCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
67.7
0.44
1.3
77
34.1
Major PPT
75.9
0.58
0.9
73.3
36.5
Minor 5ss
33
-1.9
3.3
40.8
45
Minor BPS
53.7
0.19
1.9
72.68
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021307
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046256
94814051 - 94939086
125036