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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94976295_94985904_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94976295 - 94985904
Intron Length:
9610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAAAC
5'SS Class:
major
3'SS Sequence:
CTTCTCTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTTCTCTCATCC
Flanking Amino Acid:
FPLFRTTPQQPGPSASATNV
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
68.6
36.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.5
0.71
0.7
76.7
25.3
Minor 5ss
32.1
-2
3.2
42.9
44.3
Minor BPS
49.4
-0
1.8
63.59
42

Associated Gene:

Gene:
SEC61B
Ensembl Gene ID:
ENSAPLG00000011260
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039374
94972876 - 94986773
13898