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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_94976905_94977094_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
94976905 - 94977094
Intron Length:
190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
ATCTCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATATTTTGATCT
Flanking Amino Acid:
EPVDVFVCDQVSACIPILRL
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70.9
36.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73.9
0.54
0.9
65.8
40.3
Minor 5ss
24.6
-2.9
3
28.8
43.6
Minor BPS
52.5
0.16
1.7
71.64
39.3

Associated Gene:

Gene:
ALG2
Ensembl Gene ID:
ENSAPLG00000011154
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011599
94976563 - 94978494
1932