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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95059950_95062844_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95059950 - 95062844
Intron Length:
2895

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAAG
5'SS Class:
major
3'SS Sequence:
ATCTGATTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TAAACTTTATCT
Flanking Amino Acid:
HTISMPSFLNKSSSSRQQTP
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1.3
77.9
38.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.9
0.61
0.9
69.9
39.9
Minor 5ss
36.5
-1.5
2.7
41.7
38.2
Minor BPS
60.7
0.41
1.6
74.99
41.4

Associated Gene:

Gene:
BLOC1S4
Ensembl Gene ID:
ENSAPLG00000011052
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011494
95059854 - 95065296
5443