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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95062980_95063722_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95062980 - 95063722
Intron Length:
743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTCTAATA
Flanking Amino Acid:
QVYKKIDNLEAFVKMIGNCV
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.6
0.62
0.9
74.6
34.7
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
61.5
0.36
1.6
72.55
33.2

Associated Gene:

Gene:
BLOC1S4
Ensembl Gene ID:
ENSAPLG00000011052
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011494
95059854 - 95065296
5443