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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_95063825_95064772_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
95063825 - 95064772
Intron Length:
948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGCGTGGC
5'SS Class:
major
3'SS Sequence:
GAATCTTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTATTATCT
Flanking Amino Acid:
VDEFVGMLDMIRSDSSQVIN
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1
59.5
39.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
70
0.45
0.9
66.8
40
Minor 5ss
26.7
-2.7
3.2
31.6
37.5
Minor BPS
59
0.36
1.9
82.47
38.4

Associated Gene:

Gene:
BLOC1S4
Ensembl Gene ID:
ENSAPLG00000011052
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011494
95059854 - 95065296
5443